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Re: MySQL 5.1.61 caused high disk IO wait
Posted by: Robert W.
Date: June 12, 2012 10:13AM

Hello Aftab,

Thanks so much for your help.

Here's the output of
SHOW GLOBAL VARIABLES;


+-----------------------------------------+-------------------------------------------------------------------------------------------+
| Variable_name | Value |
+-----------------------------------------+-------------------------------------------------------------------------------------------+
| auto_increment_increment | 1 |
| auto_increment_offset | 1 |
| autocommit | ON |
| automatic_sp_privileges | ON |
| back_log | 50 |
| basedir | /usr/ |
| big_tables | OFF |
| binlog_cache_size | 32768 |
| binlog_direct_non_transactional_updates | OFF |
| binlog_format | STATEMENT |
| bulk_insert_buffer_size | 8388608 |
| character_set_client | latin1 |
| character_set_connection | latin1 |
| character_set_database | latin1 |
| character_set_filesystem | binary |
| character_set_results | latin1 |
| character_set_server | latin1 |
| character_set_system | utf8 |
| character_sets_dir | /usr/share/mysql/charsets/ |
| collation_connection | latin1_swedish_ci |
| collation_database | latin1_swedish_ci |
| collation_server | latin1_swedish_ci |
| completion_type | 0 |
| concurrent_insert | 2 |
| connect_timeout | 10 |
| datadir | /var/lib/mysql/ |
| date_format | %Y-%m-%d |
| datetime_format | %Y-%m-%d %H:%i:%s |
| default_week_format | 0 |
| delay_key_write | ON |
| delayed_insert_limit | 100 |
| delayed_insert_timeout | 300 |
| delayed_queue_size | 1000 |
| div_precision_increment | 4 |
| engine_condition_pushdown | ON |
| error_count | 0 |
| event_scheduler | OFF |
| expire_logs_days | 0 |
| flush | OFF |
| flush_time | 0 |
| foreign_key_checks | ON |
| ft_boolean_syntax | + -><()~*:""&| |
| ft_max_word_len | 84 |
| ft_min_word_len | 4 |
| ft_query_expansion_limit | 20 |
| ft_stopword_file | (built-in) |
| general_log | OFF |
| general_log_file | /var/run/mysqld/mysqld.log |
| group_concat_max_len | 1024 |
| have_community_features | YES |
| have_compress | YES |
| have_crypt | YES |
| have_csv | YES |
| have_dynamic_loading | YES |
| have_geometry | YES |
| have_innodb | YES |
| have_ndbcluster | NO |
| have_openssl | DISABLED |
| have_partitioning | YES |
| have_query_cache | YES |
| have_rtree_keys | YES |
| have_ssl | DISABLED |
| have_symlink | YES |
| hostname | popo.instantpot.com |
| identity | 0 |
| ignore_builtin_innodb | OFF |
| init_connect | |
| init_file | |
| init_slave | |
| innodb_adaptive_hash_index | ON |
| innodb_additional_mem_pool_size | 1048576 |
| innodb_autoextend_increment | 8 |
| innodb_autoinc_lock_mode | 1 |
| innodb_buffer_pool_size | 16777216 |
| innodb_checksums | ON |
| innodb_commit_concurrency | 0 |
| innodb_concurrency_tickets | 500 |
| innodb_data_file_path | ibdata1:10M:autoextend |
| innodb_data_home_dir | |
| innodb_doublewrite | ON |
| innodb_fast_shutdown | 1 |
| innodb_file_io_threads | 4 |
| innodb_file_per_table | OFF |
| innodb_flush_log_at_trx_commit | 1 |
| innodb_flush_method | |
| innodb_force_recovery | 0 |
| innodb_lock_wait_timeout | 50 |
| innodb_locks_unsafe_for_binlog | OFF |
| innodb_log_buffer_size | 1048576 |
| innodb_log_file_size | 5242880 |
| innodb_log_files_in_group | 2 |
| innodb_log_group_home_dir | ./ |
| innodb_max_dirty_pages_pct | 90 |
| innodb_max_purge_lag | 0 |
| innodb_mirrored_log_groups | 1 |
| innodb_open_files | 300 |
| innodb_rollback_on_timeout | OFF |
| innodb_stats_method | nulls_equal |
| innodb_stats_on_metadata | ON |
| innodb_support_xa | ON |
| innodb_sync_spin_loops | 20 |
| innodb_table_locks | ON |
| innodb_thread_concurrency | 8 |
| innodb_thread_sleep_delay | 10000 |
| innodb_use_legacy_cardinality_algorithm | ON |
| insert_id | 0 |
| interactive_timeout | 50 |
| join_buffer_size | 1048576 |
| keep_files_on_create | OFF |
| key_buffer_size | 188743680 |
| key_cache_age_threshold | 300 |
| key_cache_block_size | 1024 |
| key_cache_division_limit | 100 |
| language | /usr/share/mysql/english/ |
| large_files_support | ON |
| large_page_size | 0 |
| large_pages | OFF |
| last_insert_id | 0 |
| lc_time_names | en_US |
| license | GPL |
| local_infile | ON |
| locked_in_memory | OFF |
| log | OFF |
| log_bin | OFF |
| log_bin_trust_function_creators | OFF |
| log_bin_trust_routine_creators | OFF |
| log_error | /var/lib/mysql/popo.instantpot.com.err |
| log_output | FILE |
| log_queries_not_using_indexes | ON |
| log_slave_updates | OFF |
| log_slow_queries | ON |
| log_warnings | 1 |
| long_query_time | 2.000000 |
| low_priority_updates | ON |
| lower_case_file_system | OFF |
| lower_case_table_names | 0 |
| max_allowed_packet | 16777216 |
| max_binlog_cache_size | 4294963200 |
| max_binlog_size | 1073741824 |
| max_connect_errors | 10 |
| max_connections | 115 |
| max_delayed_threads | 20 |
| max_error_count | 64 |
| max_heap_table_size | 209715200 |
| max_insert_delayed_threads | 20 |
| max_join_size | 18446744073709551615 |
| max_length_for_sort_data | 1024 |
| max_long_data_size | 16777216 |
| max_prepared_stmt_count | 16382 |
| max_relay_log_size | 0 |
| max_seeks_for_key | 4294967295 |
| max_sort_length | 1024 |
| max_sp_recursion_depth | 0 |
| max_tmp_tables | 32 |
| max_user_connections | 0 |
| max_write_lock_count | 4294967295 |
| min_examined_row_limit | 0 |
| multi_range_count | 256 |
| myisam_data_pointer_size | 6 |
| myisam_max_sort_file_size | 2146435072 |
| myisam_mmap_size | 4294967295 |
| myisam_recover_options | OFF |
| myisam_repair_threads | 1 |
| myisam_sort_buffer_size | 100663296 |
| myisam_stats_method | nulls_unequal |
| myisam_use_mmap | OFF |
| net_buffer_length | 16384 |
| net_read_timeout | 30 |
| net_retry_count | 10 |
| net_write_timeout | 60 |
| new | OFF |
| old | OFF |
| old_alter_table | OFF |
| old_passwords | OFF |
| open_files_limit | 20125 |
| optimizer_prune_level | 1 |
| optimizer_search_depth | 62 |
| optimizer_switch | index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on |
| pid_file | /var/run/mysqld/mysqld.pid |
| plugin_dir | /usr/lib/mysql/plugin |
| port | 0 |
| preload_buffer_size | 32768 |
| profiling | OFF |
| profiling_history_size | 15 |
| protocol_version | 10 |
| pseudo_thread_id | 0 |
| query_alloc_block_size | 131072 |
| query_cache_limit | 4194304 |
| query_cache_min_res_unit | 4096 |
| query_cache_size | 104857600 |
| query_cache_type | ON |
| query_cache_wlock_invalidate | OFF |
| query_prealloc_size | 66560 |
| rand_seed1 | |
| rand_seed2 | |
| range_alloc_block_size | 4096 |
| read_buffer_size | 1048576 |
| read_only | OFF |
| read_rnd_buffer_size | 786432 |
| relay_log | |
| relay_log_index | |
| relay_log_info_file | relay-log.info |
| relay_log_purge | ON |
| relay_log_space_limit | 0 |
| report_host | |
| report_password | |
| report_port | 3306 |
| report_user | |
| rpl_recovery_rank | 0 |
| secure_auth | OFF |
| secure_file_priv | |
| server_id | 0 |
| skip_external_locking | ON |
| skip_name_resolve | OFF |
| skip_networking | ON |
| skip_show_database | OFF |
| slave_compressed_protocol | OFF |
| slave_exec_mode | STRICT |
| slave_load_tmpdir | /tmp |
| slave_net_timeout | 3600 |
| slave_skip_errors | OFF |
| slave_transaction_retries | 10 |
| slow_launch_time | 2 |
| slow_query_log | ON |
| slow_query_log_file | /var/log/mysql-slow.log |
| socket | /var/lib/mysql/mysql.sock |
| sort_buffer_size | 1048576 |
| sql_auto_is_null | ON |
| sql_big_selects | ON |
| sql_big_tables | OFF |
| sql_buffer_result | OFF |
| sql_log_bin | ON |
| sql_log_off | OFF |
| sql_log_update | ON |
| sql_low_priority_updates | ON |
| sql_max_join_size | 18446744073709551615 |
| sql_mode | |
| sql_notes | ON |
| sql_quote_show_create | ON |
| sql_safe_updates | OFF |
| sql_select_limit | 18446744073709551615 |
| sql_slave_skip_counter | |
| sql_warnings | OFF |
| ssl_ca | |
| ssl_capath | |
| ssl_cert | |
| ssl_cipher | |
| ssl_key | |
| storage_engine | MyISAM |
| sync_binlog | 0 |
| sync_frm | ON |
| system_time_zone | EDT |
| table_definition_cache | 1500 |
| table_lock_wait_timeout | 50 |
| table_open_cache | 10000 |
| table_type | MyISAM |
| thread_cache_size | 1024 |
| thread_handling | one-thread-per-connection |
| thread_stack | 196608 |
| time_format | %H:%i:%s |
| time_zone | SYSTEM |
| timed_mutexes | OFF |
| timestamp | 1339517334 |
| tmp_table_size | 209715200 |
| tmpdir | /tmp |
| transaction_alloc_block_size | 8192 |
| transaction_prealloc_size | 4096 |
| tx_isolation | REPEATABLE-READ |
| unique_checks | ON |
| updatable_views_with_limit | YES |
| version | 5.1.61-log |
| version_comment | Source distribution |
| version_compile_machine | i386 |
| version_compile_os | redhat-linux-gnu |
| wait_timeout | 500 |
| warning_count | 0 |
+-----------------------------------------+-------------------------------------------------------------------------------------------+
276 rows in set (0.00 sec)


SHOW GLOBAL STATUS;
ERROR 2006 (HY000): MySQL server has gone away
No connection. Trying to reconnect...
Connection id: 288813
Current database: *** NONE ***

+-----------------------------------+-------------+
| Variable_name | Value |
+-----------------------------------+-------------+
| Aborted_clients | 103 |
| Aborted_connects | 0 |
| Binlog_cache_disk_use | 0 |
| Binlog_cache_use | 0 |
| Bytes_received | 2028768713 |
| Bytes_sent | 57871464733 |
| Com_admin_commands | 1 |
| Com_assign_to_keycache | 0 |
| Com_alter_db | 0 |
| Com_alter_db_upgrade | 0 |
| Com_alter_event | 0 |
| Com_alter_function | 0 |
| Com_alter_procedure | 0 |
| Com_alter_server | 0 |
| Com_alter_table | 870 |
| Com_alter_tablespace | 0 |
| Com_analyze | 0 |
| Com_backup_table | 0 |
| Com_begin | 0 |
| Com_binlog | 0 |
| Com_call_procedure | 0 |
| Com_change_db | 279220 |
| Com_change_master | 0 |
| Com_check | 0 |
| Com_checksum | 0 |
| Com_commit | 0 |
| Com_create_db | 0 |
| Com_create_event | 0 |
| Com_create_function | 0 |
| Com_create_index | 0 |
| Com_create_procedure | 0 |
| Com_create_server | 0 |
| Com_create_table | 0 |
| Com_create_trigger | 0 |
| Com_create_udf | 0 |
| Com_create_user | 0 |
| Com_create_view | 0 |
| Com_dealloc_sql | 0 |
| Com_delete | 8793 |
| Com_delete_multi | 0 |
| Com_do | 0 |
| Com_drop_db | 0 |
| Com_drop_event | 0 |
| Com_drop_function | 0 |
| Com_drop_index | 0 |
| Com_drop_procedure | 0 |
| Com_drop_server | 0 |
| Com_drop_table | 0 |
| Com_drop_trigger | 0 |
| Com_drop_user | 0 |
| Com_drop_view | 0 |
| Com_empty_query | 0 |
| Com_execute_sql | 0 |
| Com_flush | 0 |
| Com_grant | 0 |
| Com_ha_close | 0 |
| Com_ha_open | 0 |
| Com_ha_read | 0 |
| Com_help | 0 |
| Com_insert | 9194 |
| Com_insert_select | 0 |
| Com_install_plugin | 0 |
| Com_kill | 0 |
| Com_load | 0 |
| Com_load_master_data | 0 |
| Com_load_master_table | 0 |
| Com_lock_tables | 0 |
| Com_optimize | 721 |
| Com_preload_keys | 0 |
| Com_prepare_sql | 0 |
| Com_purge | 0 |
| Com_purge_before_date | 0 |
| Com_release_savepoint | 0 |
| Com_rename_table | 0 |
| Com_rename_user | 0 |
| Com_repair | 0 |
| Com_replace | 2136 |
| Com_replace_select | 0 |
| Com_reset | 0 |
| Com_restore_table | 0 |
| Com_revoke | 0 |
| Com_revoke_all | 0 |
| Com_rollback | 0 |
| Com_rollback_to_savepoint | 0 |
| Com_savepoint | 0 |
| Com_select | 2005188 |
| Com_set_option | 569276 |
| Com_show_authors | 0 |
| Com_show_binlog_events | 0 |
| Com_show_binlogs | 0 |
| Com_show_charsets | 0 |
| Com_show_collations | 0 |
| Com_show_column_types | 0 |
| Com_show_contributors | 0 |
| Com_show_create_db | 0 |
| Com_show_create_event | 0 |
| Com_show_create_func | 0 |
| Com_show_create_proc | 0 |
| Com_show_create_table | 394 |
| Com_show_create_trigger | 0 |
| Com_show_databases | 0 |
| Com_show_engine_logs | 0 |
| Com_show_engine_mutex | 0 |
| Com_show_engine_status | 0 |
| Com_show_events | 0 |
| Com_show_errors | 0 |
| Com_show_fields | 282712 |
| Com_show_function_status | 0 |
| Com_show_grants | 0 |
| Com_show_keys | 435 |
| Com_show_master_status | 0 |
| Com_show_new_master | 0 |
| Com_show_open_tables | 0 |
| Com_show_plugins | 0 |
| Com_show_privileges | 0 |
| Com_show_procedure_status | 0 |
| Com_show_processlist | 0 |
| Com_show_profile | 0 |
| Com_show_profiles | 0 |
| Com_show_slave_hosts | 0 |
| Com_show_slave_status | 0 |
| Com_show_status | 24 |
| Com_show_storage_engines | 0 |
| Com_show_table_status | 323 |
| Com_show_tables | 367297 |
| Com_show_triggers | 322 |
| Com_show_variables | 1842 |
| Com_show_warnings | 0 |
| Com_slave_start | 0 |
| Com_slave_stop | 0 |
| Com_stmt_close | 93 |
| Com_stmt_execute | 93 |
| Com_stmt_fetch | 0 |
| Com_stmt_prepare | 93 |
| Com_stmt_reprepare | 0 |
| Com_stmt_reset | 0 |
| Com_stmt_send_long_data | 0 |
| Com_truncate | 16633 |
| Com_uninstall_plugin | 0 |
| Com_unlock_tables | 0 |
| Com_update | 95436 |
| Com_update_multi | 0 |
| Com_xa_commit | 0 |
| Com_xa_end | 0 |
| Com_xa_prepare | 0 |
| Com_xa_recover | 0 |
| Com_xa_rollback | 0 |
| Com_xa_start | 0 |
| Compression | OFF |
| Connections | 288814 |
| Created_tmp_disk_tables | 601941 |
| Created_tmp_files | 202 |
| Created_tmp_tables | 980086 |
| Delayed_errors | 0 |
| Delayed_insert_threads | 0 |
| Delayed_writes | 0 |
| Flush_commands | 1 |
| Handler_commit | 93 |
| Handler_delete | 4516 |
| Handler_discover | 0 |
| Handler_prepare | 0 |
| Handler_read_first | 31074 |
| Handler_read_key | 185553850 |
| Handler_read_next | 178224887 |
| Handler_read_prev | 19207031 |
| Handler_read_rnd | 9630832 |
| Handler_read_rnd_next | 146775522 |
| Handler_rollback | 0 |
| Handler_savepoint | 0 |
| Handler_savepoint_rollback | 0 |
| Handler_update | 23088559 |
| Handler_write | 109394426 |
| Innodb_buffer_pool_pages_data | 121 |
| Innodb_buffer_pool_pages_dirty | 0 |
| Innodb_buffer_pool_pages_flushed | 1 |
| Innodb_buffer_pool_pages_free | 903 |
| Innodb_buffer_pool_pages_misc | 0 |
| Innodb_buffer_pool_pages_total | 1024 |
| Innodb_buffer_pool_read_ahead_rnd | 2 |
| Innodb_buffer_pool_read_ahead_seq | 0 |
| Innodb_buffer_pool_read_requests | 4065 |
| Innodb_buffer_pool_reads | 75 |
| Innodb_buffer_pool_wait_free | 0 |
| Innodb_buffer_pool_write_requests | 1 |
| Innodb_data_fsyncs | 7 |
| Innodb_data_pending_fsyncs | 0 |
| Innodb_data_pending_reads | 0 |
| Innodb_data_pending_writes | 0 |
| Innodb_data_read | 4165632 |
| Innodb_data_reads | 93 |
| Innodb_data_writes | 7 |
| Innodb_data_written | 35328 |
| Innodb_dblwr_pages_written | 1 |
| Innodb_dblwr_writes | 1 |
| Innodb_log_waits | 0 |
| Innodb_log_write_requests | 0 |
| Innodb_log_writes | 2 |
| Innodb_os_log_fsyncs | 5 |
| Innodb_os_log_pending_fsyncs | 0 |
| Innodb_os_log_pending_writes | 0 |
| Innodb_os_log_written | 1024 |
| Innodb_page_size | 16384 |
| Innodb_pages_created | 0 |
| Innodb_pages_read | 121 |
| Innodb_pages_written | 1 |
| Innodb_row_lock_current_waits | 0 |
| Innodb_row_lock_time | 0 |
| Innodb_row_lock_time_avg | 0 |
| Innodb_row_lock_time_max | 0 |
| Innodb_row_lock_waits | 0 |
| Innodb_rows_deleted | 0 |
| Innodb_rows_inserted | 0 |
| Innodb_rows_read | 1146 |
| Innodb_rows_updated | 0 |
| Key_blocks_not_flushed | 0 |
| Key_blocks_unused | 97685 |
| Key_blocks_used | 77678 |
| Key_read_requests | 626270126 |
| Key_reads | 295412 |
| Key_write_requests | 63985360 |
| Key_writes | 448349 |
| Last_query_cost | 0.000000 |
| Max_used_connections | 80 |
| Not_flushed_delayed_rows | 0 |
| Open_files | 1257 |
| Open_streams | 0 |
| Open_table_definitions | 451 |
| Open_tables | 850 |
| Opened_files | 2915141 |
| Opened_table_definitions | 37253 |
| Opened_tables | 38558 |
| Prepared_stmt_count | 0 |
| Qcache_free_blocks | 7239 |
| Qcache_free_memory | 24870984 |
| Qcache_hits | 7843195 |
| Qcache_inserts | 1660354 |
| Qcache_lowmem_prunes | 1032413 |
| Qcache_not_cached | 344665 |
| Qcache_queries_in_cache | 15580 |
| Qcache_total_blocks | 42930 |
| Queries | 11772888 |
| Questions | 11772702 |
| Rpl_status | NULL |
| Select_full_join | 227 |
| Select_full_range_join | 10350 |
| Select_range | 254881 |
| Select_range_check | 0 |
| Select_scan | 676278 |
| Slave_open_temp_tables | 0 |
| Slave_retried_transactions | 0 |
| Slave_running | OFF |
| Slow_launch_threads | 0 |
| Slow_queries | 31354 |
| Sort_merge_passes | 97 |
| Sort_range | 118928 |
| Sort_rows | 12323933 |
| Sort_scan | 320910 |
| Ssl_accept_renegotiates | 0 |
| Ssl_accepts | 0 |
| Ssl_callback_cache_hits | 0 |
| Ssl_cipher | |
| Ssl_cipher_list | |
| Ssl_client_connects | 0 |
| Ssl_connect_renegotiates | 0 |
| Ssl_ctx_verify_depth | 0 |
| Ssl_ctx_verify_mode | 0 |
| Ssl_default_timeout | 0 |
| Ssl_finished_accepts | 0 |
| Ssl_finished_connects | 0 |
| Ssl_session_cache_hits | 0 |
| Ssl_session_cache_misses | 0 |
| Ssl_session_cache_mode | NONE |
| Ssl_session_cache_overflows | 0 |
| Ssl_session_cache_size | 0 |
| Ssl_session_cache_timeouts | 0 |
| Ssl_sessions_reused | 0 |
| Ssl_used_session_cache_entries | 0 |
| Ssl_verify_depth | 0 |
| Ssl_verify_mode | 0 |
| Ssl_version | |
| Table_locks_immediate | 2635258 |
| Table_locks_waited | 831 |
| Tc_log_max_pages_used | 0 |
| Tc_log_page_size | 0 |
| Tc_log_page_waits | 0 |
| Threads_cached | 76 |
| Threads_connected | 4 |
| Threads_created | 80 |
| Threads_running | 1 |
| Uptime | 394233 |
| Uptime_since_flush_status | 394233 |
+-----------------------------------+-------------+
291 rows in set (0.02 sec)


I get error to run the mydqldump command. -s option is not known.

mysqldump -t -t 10 ./slow_query_log
-- MySQL dump 10.13 Distrib 5.1.61, for redhat-linux-gnu (i386)
--
-- Host: localhost Database: 10
-- ------------------------------------------------------
-- Server version 5.1.61-log

/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
/*!40101 SET NAMES utf8 */;
/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
/*!40103 SET TIME_ZONE='+00:00' */;
/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
mysqldump: Got error: 1049: Unknown database '10' when selecting the database

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Re: MySQL 5.1.61 caused high disk IO wait
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June 12, 2012 10:13AM


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