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MySQL gets killed by OS every 25 days or so
Posted by: Peter Sylvester
Date: April 18, 2012 08:51AM

About 4 months ago we migrated from MS SQL Server to MySQL 5.5. Since then we have been experiencing an issue once approximately ever 25 days since where CentOS runs out of memory and as a result it kills MySQL. MySQL safe restarts mysql so mysql is only completely down for a minute or two, but we can suffer performance and connectivity losses for hours before CentOS kills the mysqld thread. We usually see issues from 1am to 5am, but never during the day when traffic is highest which is what's really baffling about this situation. Despite normally seeing connectivity and performance issues from 1am to 5am, mysql server typically gets killed around 4 or 5am, around the same time mysqldump runs.

We thought mysqldump may have been the culprit. However it starts at 4am daily, but we see problems as early as 1am on some nights. Also, I checked and our script is running mysqldump with the --opt switch, so it shouldn't be buffering a lot of data during the dump process.

We also considered the backup app that we're using that gets the dump files and backs them up to tape. We changed the time that it runs to 6am and the problem was unchanged.

We have several jobs that run periodically throughout the night, but none are very resource intensive and don't take very long to run at all.

Here's some stats for what we're working with and the current entries in the my.cnf file. Any help or suggestions for things that we can try would be very much appreciated.

Intel(R) Xeon(R) CPU E5530 @ 2.40GHz
cpu cores: 4
Memory: 12293480 (12 gigs)
OS: CentOS 5.5
Linux 2.6.18-274.12.1.el5 #1 SMP Tue Nov 29 13:37:46 EST 2011 x86_64 x86_64 x86_64 GNU/Linux

port = 3306
socket = /var/lib/mysql/mysql.sock

port = 3306
socket = /var/lib/mysql/mysql.sock
ssl-ca=<file location>
ssl-cert=<file location>
ssl-key=<file location>
back_log = 50
max_connections = 500
table_open_cache = 2048
table_definition_cache = 9000
max_allowed_packet = 16M
binlog_cache_size = 1M
max_heap_table_size = 64M
read_buffer_size = 2M
read_rnd_buffer_size = 16M
sort_buffer_size = 8M
join_buffer_size = 8M
thread_cache_size = 130
thread_concurrency = 16
query_cache_size = 64M
query_cache_limit = 1M
ft_min_word_len = 4
thread_stack = 192K
transaction_isolation = REPEATABLE-READ
tmp_table_size = 64M
key_buffer_size = 32M
bulk_insert_buffer_size = 64M
myisam_sort_buffer_size = 128M
myisam_max_sort_file_size = 10G
myisam_repair_threads = 1
innodb_additional_mem_pool_size = 16M
innodb_buffer_pool_size = 7G
innodb_thread_concurrency = 16
innodb_flush_log_at_trx_commit = 2
innodb_log_file_size = 256M
innodb_log_files_in_group = 3
innodb_max_dirty_pages_pct = 70
innodb_lock_wait_timeout = 120


open-files-limit = 8192

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Written By
MySQL gets killed by OS every 25 days or so
April 18, 2012 08:51AM
April 18, 2012 10:40AM

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