Help on a mysql error log file

[Giovanni Chiozza]

Hi all,

I got a php application runnng on a PC 24 h on 7x7 and yesterday I got some issue with it. I'm using WAMP SERVER.
I got a query running every 2 seconds and I don't know if it can be the cause of issue. Memory , buffers....


I've downloaded the myslq log
Are there anybody who can explain me easily (I'n not a programmer) where the main issue is ?
Many Thanks

How can I attach the LOG FILE ???

2018-08-18T06:59:53.445766Z 0 [Warning] InnoDB: A long semaphore wait:
--Thread 6032 has waited at row0upd.cc line 2858 for 241.00 seconds the semaphore:
X-lock on RW-latch at 00000000178D6AE0 created in file buf0buf.cc line 1460
a writer (thread id 2108) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time read locked in file btr0pcur.ic line 562
Last time write locked in file G:\ade\build\sb_0-26514852-1514435511.83\mysql-5.7.21\storage\innobase\buf\buf0flu.cc line 1198
InnoDB: ###### Starts InnoDB Monitor for 30 secs to print diagnostic info:
InnoDB: Pending preads 0, pwrites 0

=====================================
2018-08-18 09:00:02 0xa28 INNODB MONITOR OUTPUT
=====================================
Per second averages calculated from the last 14 seconds
-----------------
BACKGROUND THREAD
-----------------
srv_master_thread loops: 67298 srv_active, 0 srv_shutdown, 70686 srv_idle
srv_master_thread log flush and writes: 137984
----------
SEMAPHORES
----------
OS WAIT ARRAY INFO: reservation count 473730
--Thread 6032 has waited at row0upd.cc line 2858 for 250.00 seconds the semaphore:
X-lock on RW-latch at 00000000178D6AE0 created in file buf0buf.cc line 1460
a writer (thread id 2108) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time read locked in file btr0pcur.ic line 562
Last time write locked in file G:\ade\build\sb_0-26514852-1514435511.83\mysql-5.7.21\storage\innobase\buf\buf0flu.cc line 1198
OS WAIT ARRAY INFO: signal count 473045
RW-shared spins 0, rounds 124965, OS waits 62481
RW-excl spins 0, rounds 103548, OS waits 3434
RW-sx spins 5, rounds 105, OS waits 3
Spin rounds per wait: 124965.00 RW-shared, 103548.00 RW-excl, 21.00 RW-sx
------------
TRANSACTIONS
------------
Trx id counter 810795
Purge done for trx's n:o < 810792 undo n:o < 0 state: running but idle
History list length 27
LIST OF TRANSACTIONS FOR EACH SESSION:
---TRANSACTION 810792, ACTIVE 250 sec updating or deleting, thread declared inside InnoDB 4999
mysql tables in use 1, locked 1
2 lock struct(s), heap size 1136, 1 row lock(s)
MySQL thread id 148218, OS thread handle 6032, query id 522946 localhost ::1 utente_tat updating
UPDATE do_update SET updated = 1 WHERE description = 'red_tubes'
--------
FILE I/O
--------
I/O thread 0 state: waiting for i/o request (insert buffer thread)
I/O thread 1 state: waiting for i/o request (log thread)
I/O thread 2 state: waiting for i/o request (read thread)
I/O thread 3 state: waiting for i/o request (read thread)
I/O thread 4 state: waiting for i/o request (read thread)
I/O thread 5 state: waiting for i/o request (read thread)
I/O thread 6 state: waiting for i/o request (write thread)
I/O thread 7 state: waiting for i/o request (write thread)
I/O thread 8 state: waiting for i/o request (write thread)
I/O thread 9 state: waiting for i/o request (write thread)
Pending normal aio reads: [0, 0, 0, 0] , aio writes: [0, 0, 0, 0] ,
ibuf aio reads:, log i/o's:, sync i/o's:
Pending flushes (fsync) log: 0; buffer pool: 1
434 OS file reads, 594258 OS file writes, 383465 OS fsyncs
0.00 reads/s, 0 avg bytes/read, 0.00 writes/s, 0.00 fsyncs/s
-------------------------------------
INSERT BUFFER AND ADAPTIVE HASH INDEX
-------------------------------------
Ibuf: size 1, free list len 0, seg size 2, 0 merges
merged operations:
insert 0, delete mark 0, delete 0
discarded operations:
insert 0, delete mark 0, delete 0
Hash table size 69257, node heap has 1 buffer(s)
Hash table size 69257, node heap has 1 buffer(s)
Hash table size 69257, node heap has 0 buffer(s)
Hash table size 69257, node heap has 3 buffer(s)
Hash table size 69257, node heap has 0 buffer(s)
Hash table size 69257, node heap has 0 buffer(s)
Hash table size 69257, node heap has 0 buffer(s)
Hash table size 69257, node heap has 0 buffer(s)
0.00 hash searches/s, 0.00 non-hash searches/s
---
LOG
---
Log sequence number 135438467
Log flushed up to 135438467
Pages flushed up to 135437908
Last checkpoint at 135437908
0 pending log flushes, 0 pending chkp writes
195400 log i/o's done, 0.00 log i/o's/second
----------------------
BUFFER POOL AND MEMORY
----------------------
Total large memory allocated 274595840
Dictionary memory allocated 138910
Buffer pool size 16384
Free buffers 15898
Database pages 481
Old database pages 0
Modified db pages 8
Pending reads 0
Pending writes: LRU 0, flush list 3, single page 0
Pages made young 0, not young 0
0.00 youngs/s, 0.00 non-youngs/s
Pages read 402, created 79, written 332679
0.00 reads/s, 0.00 creates/s, 0.00 writes/s
No buffer pool page gets since the last printout
Pages read ahead 0.00/s, evicted without access 0.00/s, Random read ahead 0.00/s
LRU len: 481, unzip_LRU len: 0
I/O sum[0]:cur[0], unzip sum[0]:cur[0]
--------------
ROW OPERATIONS
--------------
1 queries inside InnoDB, 0 queries in queue
0 read views open inside InnoDB
Process ID=4496, Main thread ID=1032, state: sleeping
Number of rows inserted 521, updated 68755, deleted 1, read 5127221
0.00 inserts/s, 0.00 updates/s, 0.00 deletes/s, 0.00 reads/s
----------------------------
END OF INNODB MONITOR OUTPUT
============================

=====================================
2018-08-18 09:00:22 0xa28 INNODB MONITOR OUTPUT
=====================================
Per second averages calculated from the last 20 seconds
-----------------
BACKGROUND THREAD
-----------------
srv_master_thread loops: 67298 srv_active, 0 srv_shutdown, 70706 srv_idle
srv_master_thread log flush and writes: 138004
----------
SEMAPHORES
----------
OS WAIT ARRAY INFO: reservation count 473730
--Thread 6032 has waited at row0upd.cc line 2858 for 270.00 seconds the semaphore:
X-lock on RW-latch at 00000000178D6AE0 created in file buf0buf.cc line 1460
a writer (thread id 2108) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time read locked in file btr0pcur.ic line 562
Last time write locked in file G:\ade\build\sb_0-26514852-1514435511.83\mysql-5.7.21\storage\innobase\buf\buf0flu.cc line 1198
OS WAIT ARRAY INFO: signal count 473045
RW-shared spins 0, rounds 124965, OS waits 62481
RW-excl spins 0, rounds 103548, OS waits 3434
RW-sx spins 5, rounds 105, OS waits 3
Spin rounds per wait: 124965.00 RW-shared, 103548.00 RW-excl, 21.00 RW-sx
------------
TRANSACTIONS
------------
Trx id counter 810795
Purge done for trx's n:o < 810792 undo n:o < 0 state: running but idle
History list length 27
LIST OF TRANSACTIONS FOR EACH SESSION:
---TRANSACTION 810792, ACTIVE 270 sec updating or deleting, thread declared inside InnoDB 4999
mysql tables in use 1, locked 1
2 lock struct(s), heap size 1136, 1 row lock(s)
MySQL thread id 148218, OS thread handle 6032, query id 522946 localhost ::1 utente_tat updating
UPDATE do_update SET updated = 1 WHERE description = 'red_tubes'
--------
FILE I/O
--------
I/O thread 0 state: waiting for i/o request (insert buffer thread)
I/O thread 1 state: waiting for i/o request (log thread)
I/O thread 2 state: waiting for i/o request (read thread)
I/O thread 3 state: waiting for i/o request (read thread)
I/O thread 4 state: waiting for i/o request (read thread)
I/O thread 5 state: waiting for i/o request (read thread)
I/O thread 6 state: waiting for i/o request (write thread)
I/O thread 7 state: waiting for i/o request (write thread)
I/O thread 8 state: waiting for i/o request (write thread)
I/O thread 9 state: waiting for i/o request (write thread)
Pending normal aio reads: [0, 0, 0, 0] , aio writes: [0, 0, 0, 0] ,

Only initial part of log