Re: Changing table engine to innodb manually
Upgrading tables to InnoDB will provide much better optimisation opportunities.
If you follow that path, you should set up a copy of the production system, do the Alter Table commands there, turn on the slow query log,increase innodb_buffer_pool_size to perhaps 2GB, optimise the slow queries, add transactional logic where appropriate, regression test, then replicate those changes on the production system in off-peak hours.
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