Re: Installing MySQL 5.6 on Windows 2012 R2
If you have a mysqldump from a working instance of your db, can you not download and install MySQL 5.7, then import the 5.6 dump and run mysql_upgrade?
If not, then since the problem you're having evidently wasn't a general problem with MySQL installations on Windows, have you tried installing 5.6 on a version of Windows other than Windows Server 2012 R2 ?
Failing both the above, have you tried skipping the auto-configuration step and instead manually configuring MySQL?
Or installing from a zip ?
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